| Crystal Structure of Ebola Envelope glycoprotein GP in complex with compound LD4-189ZbR |
| This entry was created with PDB-REDO version 8.17 using the deposited PDB model version 1.0 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | H 3 2 | a: 114.222 Å | b: 114.222 Å | c: 306.370 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
| Resolution | 2.59 Å | Reflections | 24264 | Test set | 2016 (8.3%) | ||
| R | 0.2204 | R-free | 0.2438 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.59 Å | Reflections | 24264 | Test set | 2016 (8.3%) | ||
| Twin | false | Radiation damage | 94 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2366 | 0.2029 |
| R-free | 0.2528 | 0.2278 |
| Bond length RMS Z-score | 0.672 | 0.570 |
| Bond angle RMS Z-score | 0.677 | 0.743 |
| Model quality | ||
| Ramachandran plot normality | 0.264 87 | -1.983 31 |
| Rotamer normality | -3.120 30 | -3.559 24 |
| Coarse packing | -1.057 10 | -1.104 9 |
| Fine packing | -2.141 11 | -2.067 13 |
| MolProbity Clashscore | 3.240 72 | 3.240 72 |
| Hydrogen bond satisfaction | 0.871 22 | 0.888 36 |
| WHAT_CHECK | Report | No Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | N/A |
| Side chains built | 0 |
| Waters removed | N/A |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 36 |
| Residues fitting density worse | 1 |