| Cat DHX9 in Complex with Compound 23 and ADP |
| This entry was created with PDB-REDO version 8.17 using the deposited PDB model version 1.1 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 43 21 2 | a: 85.882 Å | b: 85.882 Å | c: 346.510 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.35 Å | Reflections | 55361 | Test set | 2791 (5.0%) | ||
| R | 0.2051 | R-free | 0.2619 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.35 Å | Reflections | 55361 | Test set | 2791 (5.0%) | ||
| Twin | false | Radiation damage | 42 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2052 | 0.1856 |
| R-free | 0.2626 | 0.2403 |
| Bond length RMS Z-score | 1.344 | 0.221 |
| Bond angle RMS Z-score | 0.999 | 0.451 |
| Model quality | ||
| Ramachandran plot normality | -2.302 26 | -1.241 49 |
| Rotamer normality | -2.694 37 | -1.347 65 |
| Coarse packing | 0.760 79 | 0.810 80 |
| Fine packing | -0.801 61 | -0.784 62 |
| MolProbity Clashscore | 2.810 77 | 1.730 90 |
| Hydrogen bond satisfaction | 0.896 45 | 0.897 46 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | N/A |
| Side chains built | 0 |
| Waters removed | N/A |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 11 |
| Residues fitting density worse | 1 |