| High resolution structure of Lectin-Like ox-LDL Receptor 1 with BI-0115 in space group P 21 21 21 |
| This entry was created with PDB-REDO version 8.17 using the deposited PDB model version 1.0 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 82.545 Å | b: 110.246 Å | c: 117.057 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 1.98 Å | Reflections | 71538 | Test set | 3700 (5.2%) | ||
| R | 0.2026 | R-free | 0.2414 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.98 Å | Reflections | 71538 | Test set | 3700 (5.2%) | ||
| Twin | false | Radiation damage | 72 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure |
Re-refined (only) structure
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All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2186 | 0.1943 |
| R-free | 0.2492 | 0.2387 |
| Bond length RMS Z-score | 0.772 | 0.455 |
| Bond angle RMS Z-score | 0.831 | 0.616 |
| Model quality | ||
| Ramachandran plot normality | -2.504 23 | -2.240 27 |
| Rotamer normality | -1.912 53 | -1.278 66 |
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| MolProbity Clashscore | 4.360 59 | 3.940 64 |
| Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | N/A |
| Side chains built | 0 |
| Waters removed | N/A |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 35 |
| Residues fitting density worse | 0 |