| [2Fe-2S] SufU from Mycobacterium tuberculosis |
| This entry was created with PDB-REDO version 8.17 using the deposited PDB model version 1.0 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | I 4 | a: 100.118 Å | b: 100.118 Å | c: 31.333 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 1.95 Å | Reflections | 11605 | Test set | 578 (5.0%) | ||
| R | 0.1786 | R-free | 0.2099 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.95 Å | Reflections | 11605 | Test set | 578 (5.0%) | ||
| Twin | false | Radiation damage |
100
Data shows severe radiation damage
|
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| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1797 | 0.1790 |
| R-free | 0.2106 | 0.2132 |
| Bond length RMS Z-score | 0.416 | 0.512 |
| Bond angle RMS Z-score | 0.679 | 0.666 |
| Model quality | ||
| Ramachandran plot normality | -0.027 81 | -0.294 75 |
| Rotamer normality | -0.301 85 | 0.045 90 |
| Coarse packing | 0.848 81 | 0.902 83 |
| Fine packing | -0.621 67 | -0.390 74 |
| MolProbity Clashscore | 3.200 73 | 3.170 73 |
| Hydrogen bond satisfaction | 0.919 76 | 0.920 77 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 0 |
| Side chains built | 2 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 1 |
| Residues fitting density worse | 0 |