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| Mitochondrial fission 1 protein Fis1 T34E mutation |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 1.0 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 41 21 2 | a: 43.250 Å | b: 43.250 Å | c: 119.810 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.37 Å | Reflections | 5059 | Test set | 0 (0.0%) | ||
| R | 0.2389 | R-free | 0.2907 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.37 Å | Reflections | 5059 | Test set |
504 (10%)
New test set, PDB-REDO compensated for this
|
||
| Twin | false | Radiation damage | 22 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2542 | 0.2231 |
| R-free |
0.3054
R-free was considered biased, the
estimated unbiased R-free was used
|
0.2730 |
| Bond length RMS Z-score | 0.629 | 0.241 |
| Bond angle RMS Z-score | 0.765 | 0.452 |
| Model quality | ||
| Ramachandran plot normality | -4.149 8 | -3.387 13 |
| Rotamer normality | -5.968 5 | -4.559 13 |
| Coarse packing | 1.872 96 | 2.293 98 |
| Fine packing | 0.629 92 | 0.942 95 |
| Bump severity | 0.005 72 | 0.010 56 |
| Hydrogen bond satisfaction | 0.906 58 | 0.919 76 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 4 |
| Side chains built | 0 |
| Waters removed | 13 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 6 |
| Residues fitting density worse | 0 |