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CRYSTAL STRUCTURE OF SUGAR BINDING PROTEIN CBPB COMPLEXED WTIH LAMINARIBIOSE FROM CLOSTRIDIUM THERMOCELLUM |
This entry was created with PDB-REDO version 7.38. |
From PDB header | |||||||
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Spacegroup | P 1 21 1 | a: 72.750 Å | b: 46.440 Å | c: 116.490 Å | α: 90.00° | β: 106.58° | γ: 90.00° |
Resolution | 1.68 Å | Reflections | 81514 | Test set | 1856 (2.3%) | ||
R | 0.1730 | R-free | 0.2100 | ||||
According to PDB-REDO | |||||||
Resolution | 1.68 Å | Reflections | 81514 | Test set | 1856 (2.3%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
PDB | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1808 | 0.1868 |
R-free | 0.2130 | 0.2251 |
Bond length RMS Z-score | 0.264 | 0.614 |
Bond angle RMS Z-score | 0.559 | 0.739 |
Model quality | ||
Ramachandran plot normality | 1.059 51 | 0.557 66 |
Rotamer normality | 1.546 67 | 1.246 73 |
Coarse packing | 0.238 73 | 0.342 77 |
Fine packing | 1.870 18 | 1.634 26 |
Bump severity | 0.001 92 | 0.004 78 |
Hydrogen bond satisfaction | 0.904 56 | 0.905 57 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 6 |
Side chains flipped | 7 |
Waters removed | 26 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 6 |