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| CRYSTAL STRUCTURE OF SUGAR BINDING PROTEIN CBPB COMPLEXED WTIH LAMINARIBIOSE FROM CLOSTRIDIUM THERMOCELLUM |
| This entry was created with PDB-REDO version 7.38. |
| From PDB header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 72.750 Å | b: 46.440 Å | c: 116.490 Å | α: 90.00° | β: 106.58° | γ: 90.00° |
| Resolution | 1.68 Å | Reflections | 81514 | Test set | 1856 (2.3%) | ||
| R | 0.1730 | R-free | 0.2100 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.68 Å | Reflections | 81514 | Test set | 1856 (2.3%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| PDB | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1808 | 0.1868 |
| R-free | 0.2130 | 0.2251 |
| Bond length RMS Z-score | 0.264 | 0.614 |
| Bond angle RMS Z-score | 0.559 | 0.739 |
| Model quality | ||
| Ramachandran plot normality | 1.059 51 | 0.557 66 |
| Rotamer normality | 1.546 67 | 1.246 73 |
| Coarse packing | 0.238 73 | 0.342 77 |
| Fine packing | 1.870 18 | 1.634 26 |
| Bump severity | 0.001 92 | 0.004 78 |
| Hydrogen bond satisfaction | 0.904 56 | 0.905 57 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 6 |
| Side chains flipped | 7 |
| Waters removed | 26 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 6 |