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| Importin alpha3 in complex with MERS ORF4B |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.2 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 48.222Å b: 59.711Å c: 82.640Å | α: 90.00° β: 98.89° γ: 90.00° | ||
| Resolution | 2.50 Å | Reflections | 15841 | Test set | 785 (5.0%) |
| R | 0.2487 | R-free | 0.2673 | ||
| According to PDB-REDO | |||||
| Resolution | 2.50 Å | Reflections | 15841 | Test set | 785 (5.0%) |
| Twin | false | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2811 | 0.2330 |
| R-free |
0.3386
R-free was considered biased, the
estimated unbiased R-free was used
|
0.2750 |
| Bond length RMS Z-score | 0.496 | 0.304 |
| Bond angle RMS Z-score | 0.685 | 0.517 |
| Model quality | ||
| Ramachandran plot normality | -1.339 44 | -4.440 7 |
| Rotamer normality | -3.537 32 | -3.447 33 |
| Coarse packing | 1.738 99 | 1.107 95 |
| Fine packing | -0.349 75 | -1.384 37 |
| Bump severity | 0.007 67 | 0.025 34 |
| Hydrogen bond satisfaction | 0.878 27 | 0.895 44 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 12 |
| Side chains built | 0 |
| Waters removed | 0 |
| Peptides flipped | 4 |
| Chiralities fixed | 0 |
| Residues fitting density better | 39 |
| Residues fitting density worse | 0 |