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| Importin alpha2 in complex with MERS ORF4B |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.2 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 79.312Å b: 89.680Å c: 99.360Å | α: 90.00° β: 90.00° γ: 90.00° | ||
| Resolution | 2.10 Å | Reflections | 41935 | Test set | 2019 (4.8%) |
| R | 0.1971 | R-free | 0.2076 | ||
| According to PDB-REDO | |||||
| Resolution | 2.10 Å | Reflections | 41935 | Test set | 2019 (4.8%) |
| Twin | false | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2105 | 0.1921 |
| R-free |
0.2470
R-free was considered biased, the
estimated unbiased R-free was used
|
0.2144 |
| Bond length RMS Z-score | 0.449 | 0.193 |
| Bond angle RMS Z-score | 0.674 | 0.404 |
| Model quality | ||
| Ramachandran plot normality | -0.080 78 | -0.472 68 |
| Rotamer normality | -2.168 55 | -0.637 83 |
| Coarse packing | 2.277 99 | 2.018 99 |
| Fine packing | 0.137 85 | 0.088 84 |
| Bump severity | 0.009 61 | 0.004 78 |
| Hydrogen bond satisfaction | 0.929 86 | 0.931 88 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 8 |
| Side chains built | 0 |
| Waters removed | 32 |
| Peptides flipped | 1 |
| Chiralities fixed | 0 |
| Residues fitting density better | 8 |
| Residues fitting density worse | 0 |