Structure of a MHC I-Tapasin-ERp57 complex |
This entry was created with PDB-REDO version 8.07. |
From original header | |||||||
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Spacegroup | P 2 21 21 | a: 74.760 Å | b: 168.530 Å | c: 168.530 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.70 Å | Reflections | 65652 | Test set | 3284 (5.0%) | ||
R | 0.1983 | R-free | 0.2289 | ||||
According to PDB-REDO | |||||||
Resolution | 2.70 Å | Reflections | 65652 | Test set | 3284 (5.0%) | ||
Twin | false | Radiation damage | 68 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2059 | 0.1904 |
R-free | 0.2314 | 0.2333 |
Bond length RMS Z-score | 0.863 | 0.604 |
Bond angle RMS Z-score | 0.749 | 0.761 |
Model quality | ||
Ramachandran plot normality | -2.455 24 | -2.610 21 |
Rotamer normality | -1.083 70 | -3.518 25 |
Coarse packing | -0.230 38 | -0.224 38 |
Fine packing | -1.312 40 | -1.509 31 |
Bump severity | 0.064 14 | 0.086 11 |
Hydrogen bond satisfaction | 0.886 34 | 0.879 28 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 11 |
Side chains flipped | 1 |
Waters removed | 24 |
Peptides flipped | 21 |
Chiralities fixed | 0 |
Residues fitting density better | 113 |
Residues fitting density worse | 2 |