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THE CRYSTAL STRUCTURE OF THE GH30 SUBFAMILY 10 ENZYME, ACXBH30A FROM ACETIVIBRIO CLARIFLAVUS IN COMPLEX WITH XYLOBIOSE |
This entry was created with PDB-REDO version 7.38. |
From PDB header | |||||||
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Spacegroup | P 1 21 1 | a: 59.130 Å | b: 107.494 Å | c: 66.861 Å | α: 90.00° | β: 89.88° | γ: 90.00° |
Resolution | 1.50 Å | Reflections | 124905 | Test set | 5961 (4.8%) | ||
R | 0.1650 | R-free | 0.2140 | ||||
According to PDB-REDO | |||||||
Resolution | 1.50 Å | Reflections | 124905 | Test set | 5961 (4.8%) | Twin |
true
|
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
PDB | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1647 | 0.1777 |
R-free | 0.2082 | 0.1956 |
Bond length RMS Z-score | 0.199 | 0.459 |
Bond angle RMS Z-score | 0.533 | 0.691 |
Model quality | ||
Ramachandran plot normality | 2.030 29 | 1.657 36 |
Rotamer normality | 0.872 80 | 0.441 87 |
Coarse packing | 0.283 75 | 0.342 77 |
Fine packing | 0.846 59 | 0.580 68 |
Bump severity | 0.028 31 | 0.027 32 |
Hydrogen bond satisfaction | 0.901 52 | 0.908 61 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 18 |
Side chains flipped | 2 |
Waters removed | 35 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |