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| THE CRYSTAL STRUCTURE OF THE GH30 SUBFAMILY 10 ENZYME, ACXBH30A FROM ACETIVIBRIO CLARIFLAVUS IN COMPLEX WITH XYLOBIOSE |
| This entry was created with PDB-REDO version 7.38. |
| From PDB header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 59.130 Å | b: 107.494 Å | c: 66.861 Å | α: 90.00° | β: 89.88° | γ: 90.00° |
| Resolution | 1.50 Å | Reflections | 124905 | Test set | 5961 (4.8%) | ||
| R | 0.1650 | R-free | 0.2140 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.50 Å | Reflections | 124905 | Test set | 5961 (4.8%) | Twin |
true
Data treated as twinned, but there may be other (symmetry) issues
|
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| PDB | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1647 | 0.1777 |
| R-free | 0.2082 | 0.1956 |
| Bond length RMS Z-score | 0.199 | 0.459 |
| Bond angle RMS Z-score | 0.533 | 0.691 |
| Model quality | ||
| Ramachandran plot normality | 2.030 29 | 1.657 36 |
| Rotamer normality | 0.872 80 | 0.441 87 |
| Coarse packing | 0.283 75 | 0.342 77 |
| Fine packing | 0.846 59 | 0.580 68 |
| Bump severity | 0.028 31 | 0.027 32 |
| Hydrogen bond satisfaction | 0.901 52 | 0.908 61 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 18 |
| Side chains flipped | 2 |
| Waters removed | 35 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 0 |