This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
Unlocking the structural features for the exo-xylobiosidase activity of an unusual GH11 member identified in a compost-derived consortium-xylobiose complex |
This entry was created with PDB-REDO version 7.36. |
From PDB header | |||||||
---|---|---|---|---|---|---|---|
Spacegroup | P 43 21 2 | a: 55.958 Å | b: 55.958 Å | c: 163.276 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.20 Å | Reflections | 82157 | Test set | 4194 (5.1%) | ||
R | 0.1800 | R-free | 0.2030 | ||||
According to PDB-REDO | |||||||
Resolution | 1.20 Å | Reflections | 82157 | Test set | 4194 (5.1%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
PDB | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1879 | 0.1446 |
R-free | 0.2063 | 0.1700 |
Bond length RMS Z-score | 0.273 | 0.457 |
Bond angle RMS Z-score | 0.651 | 0.748 |
Model quality | ||
Ramachandran plot normality | 0.830 58 | 0.942 55 |
Rotamer normality | 0.633 84 | 0.065 93 |
Coarse packing | 0.074 58 | 0.073 58 |
Fine packing | 1.594 28 | 1.521 31 |
Bump severity | 0.023 36 | 0.021 38 |
Hydrogen bond satisfaction | 0.902 53 | 0.894 43 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 1 |
Side chains flipped | 0 |
Waters removed | 70 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 123 |
Residues fitting density worse | 0 |