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The Zn-bound dimeric structure of K79H/G80A/H81A myoglobin |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 52.738 Å | b: 63.141 Å | c: 79.466 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.00 Å | Reflections | 18521 | Test set | 946 (5.1%) | ||
R | 0.2130 | R-free | 0.2650 | ||||
According to PDB-REDO | |||||||
Resolution | 2.00 Å | Reflections | 18521 | Test set | 946 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2134 | 0.2062 |
R-free | 0.2663 | 0.2632 |
Bond length RMS Z-score | 2.689 | 0.526 |
Bond angle RMS Z-score | 1.176 | 0.737 |
Model quality | ||
Ramachandran plot normality | -1.535 39 | -0.907 56 |
Rotamer normality | -2.185 54 | -0.956 78 |
Coarse packing | 2.987 100 | 2.940 100 |
Fine packing | 0.651 92 | 0.820 94 |
Bump severity | 0.014 49 | 0.017 44 |
Hydrogen bond satisfaction | 0.911 65 | 0.903 54 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 4 |
Side chains flipped | 0 |
Waters removed | 5 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |