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| The Co-bound dimeric structure of K78H/G80A/H82A myoglobin |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.2 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 55.202 Å | b: 62.409 Å | c: 82.553 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 1.75 Å | Reflections | 29414 | Test set | 1470 (5.0%) | ||
| R | 0.2057 | R-free | 0.2512 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.75 Å | Reflections | 29414 | Test set | 1470 (5.0%) | ||
| Twin | false | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2081 | 0.2148 |
| R-free | 0.2542 | 0.2504 |
| Bond length RMS Z-score | 2.361 | 0.527 |
| Bond angle RMS Z-score | 1.091 | 0.593 |
| Model quality | ||
| Ramachandran plot normality | -1.234 47 | 0.892 93 |
| Rotamer normality | -2.725 44 | -1.602 66 |
| Coarse packing | 3.060 100 | 3.114 100 |
| Fine packing | 0.743 93 | 0.982 95 |
| Bump severity | 0.040 23 | 0.022 37 |
| Hydrogen bond satisfaction | 0.940 93 | 0.947 96 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 3 |
| Side chains flipped | 0 |
| Waters removed | 10 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 1 |