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| The Co-bound dimeric structure of K78H/G80A/H82A myoglobin |
| This entry was created with PDB-REDO version 8.21 using the deposited PDB model version 1.3 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 55.202Å b: 62.409Å c: 82.553Å | α: 90.00° β: 90.00° γ: 90.00° | ||
| Resolution | 1.75 Å | Reflections | 29414 | Test set | 1470 (5.0%) |
| R | 0.2057 | R-free | 0.2512 | ||
| According to PDB-REDO | |||||
| Resolution | 1.75 Å | Reflections | 29414 | Test set | 1470 (5.0%) |
| Twin | false | Radiation damage | 46 | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2085 | 0.2107 |
| R-free | 0.2546 | 0.2557 |
| Bond length RMS Z-score | 2.083 | 0.638 |
| Bond angle RMS Z-score | 1.110 | 0.686 |
| Model quality | ||
| Ramachandran plot normality | -1.234 49 | -0.435 71 |
| Rotamer normality | -2.725 37 | -2.063 49 |
| Coarse packing | 3.060 99 | 3.013 99 |
| Fine packing | 1.640 97 | 1.668 97 |
| MolProbity Clashscore | 5.030 53 | 5.430 49 |
| Hydrogen bond satisfaction | 0.937 92 | 0.954 98 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | N/A |
| Side chains built | 0 |
| Waters removed | N/A |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 2 |