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| Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in a closed state bound to laminaritriose (Form I) |
| This entry was created with PDB-REDO version 7.33. |
| From PDB header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 57.930 Å | b: 63.550 Å | c: 110.230 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.30 Å | Reflections | 18641 | Test set | 867 (4.7%) | ||
| R | 0.2030 | R-free | 0.2650 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.30 Å | Reflections | 18641 | Test set | 867 (4.7%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| PDB | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2028 | 0.2119 |
| R-free | 0.2660 | 0.2563 |
| Bond length RMS Z-score | 0.805 | 0.291 |
| Bond angle RMS Z-score | 1.195 | 0.525 |
| Model quality | ||
| Ramachandran plot normality | 2.433 23 | 1.060 51 |
| Rotamer normality | 3.437 33 | 0.935 78 |
| Coarse packing | 0.346 44 | 0.108 56 |
| Fine packing | 1.440 34 | 1.070 50 |
| Bump severity | 0.010 58 | 0.005 74 |
| Hydrogen bond satisfaction | 0.909 63 | 0.900 50 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 1 |
| Side chains flipped | 0 |
| Waters removed | 1 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 0 |