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| SOX2 bound to Importin-alpha 3 |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.3 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | C 1 2 1 | a: 148.580Å b: 118.990Å c: 94.870Å | α: 90.00° β: 128.77° γ: 90.00° | ||
| Resolution | 2.30 Å | Reflections | 52550 | Test set | 2748 (5.2%) |
| R | 0.2202 | R-free | 0.2450 | ||
| According to PDB-REDO | |||||
| Resolution | 2.30 Å | Reflections | 52550 | Test set | 2748 (5.2%) |
| Twin | false | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2276 | 0.1981 |
| R-free | 0.2576 | 0.2351 |
| Bond length RMS Z-score | 0.429 | 0.274 |
| Bond angle RMS Z-score | 0.678 | 0.461 |
| Model quality | ||
| Ramachandran plot normality | -0.709 62 | -1.626 37 |
| Rotamer normality | -0.723 82 | -1.698 64 |
| Coarse packing | 2.050 99 | 1.979 99 |
| Fine packing | -0.225 78 | -0.170 79 |
| Bump severity | 0.023 36 | 0.020 39 |
| Hydrogen bond satisfaction | 0.899 49 | 0.624 1 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 22 |
| Side chains built | 0 |
| Waters removed | 37 |
| Peptides flipped | 5 |
| Chiralities fixed | 0 |
| Residues fitting density better | 56 |
| Residues fitting density worse | 0 |