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| SOX2 bound to Importin-alpha 2 |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.3 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 78.070Å b: 91.291Å c: 97.590Å | α: 90.00° β: 90.00° γ: 90.00° | ||
| Resolution | 2.70 Å | Reflections | 18929 | Test set | 897 (4.7%) |
| R | 0.1954 | R-free | 0.2273 | ||
| According to PDB-REDO | |||||
| Resolution | 2.70 Å | Reflections | 18929 | Test set | 897 (4.7%) |
| Twin | false | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2070 | 0.1904 |
| R-free | 0.2420 | 0.2384 |
| Bond length RMS Z-score | 0.435 | 0.528 |
| Bond angle RMS Z-score | 0.672 | 0.700 |
| Model quality | ||
| Ramachandran plot normality | -2.144 27 | -3.785 10 |
| Rotamer normality | -2.373 51 | -3.131 38 |
| Coarse packing | 1.548 98 | 1.406 97 |
| Fine packing | -0.544 69 | -0.720 64 |
| Bump severity | 0.019 41 | 0.013 51 |
| Hydrogen bond satisfaction | 0.913 68 | 0.911 65 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 8 |
| Side chains built | 0 |
| Waters removed | 1 |
| Peptides flipped | 2 |
| Chiralities fixed | 0 |
| Residues fitting density better | 3 |
| Residues fitting density worse | 0 |