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Human poly-N-acetyl-lactosamine synthase structure demonstrates a modular assembly of catalytic subsites for GT-A glycosyltransferases |
This entry was created with PDB-REDO version 7.34. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 48.190 Å | b: 109.280 Å | c: 147.550 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.85 Å | Reflections | 67312 | Test set | 3367 (5.0%) | ||
R | 0.1830 | R-free | 0.2120 | ||||
According to PDB-REDO | |||||||
Resolution | 1.85 Å | Reflections | 67312 | Test set | 3367 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1896 | 0.1968 |
R-free | 0.2095 | 0.2152 |
Bond length RMS Z-score | 0.329 | 0.540 |
Bond angle RMS Z-score | 0.666 | 0.792 |
Model quality | ||
Ramachandran plot normality | -0.130 77 | -0.393 71 |
Rotamer normality | -0.531 85 | -0.847 80 |
Coarse packing | 0.068 65 | 0.091 66 |
Fine packing | -1.232 43 | -1.117 48 |
Bump severity | 0.398 2 | 0.209 5 |
Hydrogen bond satisfaction | 0.883 31 | 0.888 36 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 20 |
Side chains flipped | 0 |
Waters removed | 21 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 5 |
Residues fitting density worse | 1 |