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| Transcription factor DeltaFosB bZIP domain self-assembly, oxidized form |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 1.2 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 2 | a: 72.278 Å | b: 97.497 Å | c: 45.197 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.09 Å | Reflections | 18902 | Test set | 1890 (10%) | ||
| R | 0.2066 | R-free | 0.2407 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.09 Å | Reflections | 18902 | Test set | 1890 (10%) | ||
| Twin | false | Radiation damage | 58 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2222 | 0.2399 |
| R-free | 0.2482 | 0.2663 |
| Bond length RMS Z-score | 0.474 | 0.566 |
| Bond angle RMS Z-score | 0.643 | 0.622 |
| Model quality | ||
| Ramachandran plot normality | 0.016 82 | 4.659 100 |
| Rotamer normality | -2.453 42 | -0.876 75 |
| Coarse packing | 4.786 100 | 5.381 100 |
| Fine packing | 3.263 99 | 4.542 100 |
| Bump severity | 0.006 68 | 0.014 47 |
| Hydrogen bond satisfaction | 0.942 94 | 0.917 73 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 6 |
| Side chains built | 18 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 0 |