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| F1-ATPase from Fusobacterium nucleatum |
| This entry was created with PDB-REDO version 8.07 using the deposited PDB model version 1.2 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 111.940Å b: 200.209Å c: 200.209Å | α: 90.00° β: 102.20° γ: 90.00° | ||
| Resolution | 3.60 Å | Reflections | 97423 | Test set | 4872 (5.0%) |
| R | 0.2374 | R-free | 0.2801 | ||
| According to PDB-REDO | |||||
| Resolution | 3.60 Å | Reflections | 97423 | Test set | 4872 (5.0%) |
| Twin | false | Radiation damage | 86 | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2381 | 0.1867 |
| R-free | 0.2815 | 0.2339 |
| Bond length RMS Z-score | 0.613 | 0.646 |
| Bond angle RMS Z-score | 0.545 | 0.824 |
| Model quality | ||
| Ramachandran plot normality | -4.626 6 | -3.983 9 |
| Rotamer normality | -2.645 38 | -5.156 9 |
| Coarse packing | 0.052 51 | 0.673 76 |
| Fine packing | -1.705 23 | -1.301 40 |
| Bump severity | 0.006 68 | 0.025 32 |
| Hydrogen bond satisfaction | 0.819 7 | 0.785 4 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 12 |
| Side chains built | 0 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 524 |
| Residues fitting density worse | 0 |