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Gly52Ala mutant of arginine-bound ArgBP from T. maritima |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | C 1 2 1 | a: 92.572 Å | b: 52.238 Å | c: 59.889 Å | α: 90.00° | β: 117.39° | γ: 90.00° |
Resolution | 1.64 Å | Reflections | 29982 | Test set | 1512 (5.0%) | ||
R | 0.1633 | R-free | 0.1892 | ||||
According to PDB-REDO | |||||||
Resolution | 1.64 Å | Reflections | 29982 | Test set | 1512 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1632 | 0.1584 |
R-free | 0.1898 | 0.1794 |
Bond length RMS Z-score | 1.787 | 0.637 |
Bond angle RMS Z-score | 1.314 | 0.744 |
Model quality | ||
Ramachandran plot normality | -1.113 52 | -0.813 61 |
Rotamer normality | -1.074 70 | 0.122 91 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 1 |
Side chains flipped | 0 |
Waters removed | 4 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |