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| Putative SDR from Acinetobacter baumannii Crystal Form 1 |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.4 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 80.132Å b: 121.951Å c: 124.710Å | α: 90.00° β: 90.00° γ: 90.00° | ||
| Resolution | 2.10 Å | Reflections | 71965 | Test set | 3649 (5.1%) |
| R | 0.1865 | R-free | 0.2168 | ||
| According to PDB-REDO | |||||
| Resolution | 2.10 Å | Reflections | 71965 | Test set | 3649 (5.1%) |
| Twin | false | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1861 | 0.1619 |
| R-free | 0.2162 | 0.1878 |
| Bond length RMS Z-score | 0.618 | 0.567 |
| Bond angle RMS Z-score | 0.769 | 0.663 |
| Model quality | ||
| Ramachandran plot normality | -0.650 63 | 0.214 84 |
| Rotamer normality | -2.308 52 | -0.690 83 |
| Coarse packing | 2.195 99 | 2.062 99 |
| Fine packing | 0.135 85 | 0.217 86 |
| Bump severity | 0.003 82 | 0.003 82 |
| Hydrogen bond satisfaction | 0.944 95 | 0.948 96 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 7 |
| Side chains built | 0 |
| Waters removed | 9 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 33 |
| Residues fitting density worse | 0 |