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Crystal Structure of MERS-CoV S1-NTD bound with G2 Fab |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 85.989 Å | b: 63.860 Å | c: 186.778 Å | α: 90.00° | β: 90.75° | γ: 90.00° |
Resolution | 2.30 Å | Reflections | 88786 | Test set | 4349 (4.9%) | ||
R | 0.1800 | R-free | 0.2130 | ||||
According to PDB-REDO | |||||||
Resolution | 2.30 Å | Reflections | 88786 | Test set | 4349 (4.9%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1935 | 0.1909 |
R-free | 0.2202 | 0.2289 |
Bond length RMS Z-score | 0.390 | 0.630 |
Bond angle RMS Z-score | 0.595 | 0.786 |
Model quality | ||
Ramachandran plot normality | -0.718 61 | -0.940 55 |
Rotamer normality | -2.559 47 | -2.098 56 |
Coarse packing | -0.006 62 | -0.070 58 |
Fine packing | -0.372 74 | -0.236 78 |
Bump severity | 0.610 1 | 0.154 7 |
Hydrogen bond satisfaction | 0.906 58 | 0.917 73 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 27 |
Side chains flipped | 0 |
Waters removed | 68 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 7 |
Residues fitting density worse | 2 |