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Crystal Structure of MERS-CoV neutralizing antibody G2 Fab |
This entry was created with PDB-REDO version 7.29. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 40.640 Å | b: 207.140 Å | c: 103.360 Å | α: 90.00° | β: 97.70° | γ: 90.00° |
Resolution | 2.10 Å | Reflections | 95612 | Test set | 4759 (5.0%) | ||
R | 0.1810 | R-free | 0.2250 | ||||
According to PDB-REDO | |||||||
Resolution | 2.10 Å | Reflections | 95612 | Test set | 4759 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1967 | 0.1984 |
R-free | 0.2365 | 0.2266 |
Bond length RMS Z-score | 0.381 | 0.503 |
Bond angle RMS Z-score | 0.645 | 0.730 |
Model quality | ||
Ramachandran plot normality | 0.287 86 | 0.854 93 |
Rotamer normality | -3.945 26 | -1.869 60 |
Coarse packing | 0.383 79 | 0.463 82 |
Fine packing | 1.007 95 | 1.449 97 |
Bump severity | 0.033 27 | 0.010 58 |
Hydrogen bond satisfaction | 0.908 61 | 0.919 76 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 26 |
Side chains flipped | 1 |
Waters removed | 97 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 8 |
Residues fitting density worse | 0 |