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Crystal structure of the IVR-165 (H3N2) influenza virus hemagglutinin in complex with 6'-SLNLN |
This entry was created with PDB-REDO version 8.03. |
From original header | |||||||
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Spacegroup | H 3 2 | a: 101.123 Å | b: 101.123 Å | c: 387.229 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 1.75 Å | Reflections | 76874 | Test set | 3825 (5.0%) | ||
R | 0.1648 | R-free | 0.1869 | ||||
According to PDB-REDO | |||||||
Resolution | 1.75 Å | Reflections | 76874 | Test set | 3825 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1660 | 0.1760 |
R-free | 0.1865 | 0.1973 |
Bond length RMS Z-score | 0.940 | 0.604 |
Bond angle RMS Z-score | 0.846 | 0.680 |
Model quality | ||
Ramachandran plot normality | -0.984 54 | -1.125 50 |
Rotamer normality | -1.224 73 | -0.979 78 |
Coarse packing | -0.481 37 | -0.523 35 |
Fine packing | -1.920 16 | -1.942 16 |
Bump severity | 0.826 0 | 0.527 1 |
Hydrogen bond satisfaction | 0.909 63 | 0.897 46 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 8 |
Side chains flipped | 0 |
Waters removed | 17 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 4 |