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Structure of post fusion core of 2019-nCoV S2 subunit |
This entry was created with PDB-REDO version 7.30. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 51.240 Å | b: 57.580 Å | c: 115.720 Å | α: 90.00° | β: 91.58° | γ: 90.00° |
Resolution | 2.90 Å | Reflections | 14313 | Test set | 737 (5.1%) | ||
R | 0.2590 | R-free | 0.2900 | ||||
According to PDB-REDO | |||||||
Resolution | 2.90 Å | Reflections | 14313 | Test set | 737 (5.1%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2604 | 0.2853 |
R-free |
0.3125
|
0.3450 |
Bond length RMS Z-score | 0.721 | 0.608 |
Bond angle RMS Z-score | 0.994 | 0.802 |
Model quality | ||
Ramachandran plot normality | -3.417 13 | -3.276 14 |
Rotamer normality | -4.018 25 | -4.528 20 |
Coarse packing | 1.725 99 | 1.637 98 |
Fine packing | 2.834 99 | 2.296 98 |
Bump severity | 0.026 33 | 0.111 9 |
Hydrogen bond satisfaction | 0.941 94 | 0.934 90 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 20 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 8 |
Chiralities fixed | 0 |
Residues fitting density better | 1 |
Residues fitting density worse | 3 |