| MERS-CoV spike N-terminal domain and 7D10 scFv complex |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 2.2 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 107.571 Å | b: 180.355 Å | c: 245.157 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 3.00 Å | Reflections | 97698 | Test set | 4781 (4.9%) | ||
| R | 0.1875 | R-free | 0.2248 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.97 Å | Reflections | 97698 | Test set | 4781 (4.9%) | ||
| Twin | false | Radiation damage |
98
Data shows severe radiation damage
|
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| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2060 | 0.1805 |
| R-free | 0.2415 | 0.2153 |
| Bond length RMS Z-score | 0.905 | 0.741 |
| Bond angle RMS Z-score | 0.909 | 0.929 |
| Model quality | ||
| Ramachandran plot normality | -1.719 37 | -1.784 35 |
| Rotamer normality | -3.294 28 | -2.636 38 |
| Coarse packing | -0.433 30 | -0.306 35 |
| Fine packing | -1.091 49 | -0.852 59 |
| Bump severity | 0.882 0 | 0.901 0 |
| Hydrogen bond satisfaction | 0.808 6 | 0.828 9 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 21 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 10 |
| Chiralities fixed | 0 |
| Residues fitting density better | 73 |
| Residues fitting density worse | 5 |