| MERS-CoV spike N-terminal domain and 7D10 scFv complex |
| This entry was created with PDB-REDO version 8.04. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 107.571 Å | b: 180.355 Å | c: 245.157 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 3.00 Å | Reflections | 97698 | Test set | 4781 (4.9%) | ||
| R | 0.1875 | R-free | 0.2248 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.97 Å | Reflections | 97698 | Test set | 4781 (4.9%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2050 | 0.1895 |
| R-free | 0.2403 | 0.2115 |
| Bond length RMS Z-score | 0.840 | 0.615 |
| Bond angle RMS Z-score | 0.883 | 0.791 |
| Model quality | ||
| Ramachandran plot normality | -1.719 35 | -1.435 42 |
| Rotamer normality | -3.294 35 | -2.243 53 |
| Coarse packing | -0.433 39 | -0.319 45 |
| Fine packing | -1.184 45 | -0.771 62 |
| Bump severity | 0.887 0 | 0.504 1 |
| Hydrogen bond satisfaction | 0.808 6 | 0.831 9 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 22 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 11 |
| Chiralities fixed | 0 |
| Residues fitting density better | 16 |
| Residues fitting density worse | 1 |