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Crystal structure of H7 hemagglutinin mutant H7-SVTQ ( A138S, P221T, L226Q) with 6'SLN |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | H 3 2 | a: 115.956 Å | b: 115.956 Å | c: 297.050 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 2.50 Å | Reflections | 26616 | Test set | 1360 (5.1%) | ||
R | 0.1990 | R-free | 0.2595 | ||||
According to PDB-REDO | |||||||
Resolution | 2.50 Å | Reflections | 26616 | Test set | 1360 (5.1%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.2151 | 0.2074 |
R-free | 0.2750 | 0.2749 |
Bond length RMS Z-score | 0.695 | 0.487 |
Bond angle RMS Z-score | 0.788 | 0.664 |
Model quality | ||
Ramachandran plot normality | -2.902 17 | -3.365 13 |
Rotamer normality | -3.719 29 | -3.298 35 |
Coarse packing | -0.463 38 | -0.644 29 |
Fine packing | -1.817 20 | -1.821 19 |
Bump severity | 0.223 5 | 0.234 5 |
Hydrogen bond satisfaction | 0.859 16 | 0.854 15 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 8 |
Side chains flipped | 0 |
Waters removed | 14 |
Peptides flipped | 2 |
Chiralities fixed | 0 |
Residues fitting density better | 1 |
Residues fitting density worse | 0 |