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| Crystal structure of Middle-East Respiratory Syndrome (MERS) coronavirus neutralizing antibody JC57-14 isolated from a vaccinated rhesus macaque in complex with MERS Receptor Binding Domain |
| This entry was created with PDB-REDO version 7.25. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | C 2 2 21 | a: 81.580 Å | b: 148.070 Å | c: 259.000 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 3.32 Å | Reflections | 19098 | Test set | 972 (5.1%) | ||
| R | 0.2320 | R-free | 0.2670 | ||||
| According to PDB-REDO | |||||||
| Resolution | 3.32 Å | Reflections | 19098 | Test set | 972 (5.1%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2515 | 0.2456 |
| R-free | 0.2858 | 0.2834 |
| Bond length RMS Z-score | 0.183 | 0.696 |
| Bond angle RMS Z-score | 0.494 | 1.022 |
| Model quality | ||
| Ramachandran plot normality | -1.817 33 | -2.666 20 |
| Rotamer normality | -4.418 21 | -5.919 9 |
| Coarse packing | -1.048 15 | -0.868 20 |
| Fine packing | -1.196 45 | -0.694 64 |
| Bump severity | 0.049 19 | 0.020 39 |
| Hydrogen bond satisfaction | 0.819 7 | 0.826 8 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 13 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 79 |
| Residues fitting density worse | 5 |