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| Crystal structure of Middle-East Respiratory Syndrome (MERS) coronavirus neutralizing antibody JC57-14 isolated from a vaccinated rhesus macaque. |
| This entry was created with PDB-REDO version 7.25. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 83.698 Å | b: 129.804 Å | c: 84.003 Å | α: 90.00° | β: 110.01° | γ: 90.00° |
| Resolution | 1.99 Å | Reflections | 103508 | Test set | 5059 (4.9%) | ||
| R | 0.1760 | R-free | 0.2080 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.99 Å | Reflections | 103508 | Test set | 5059 (4.9%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1859 | 0.1710 |
| R-free | 0.2182 | 0.2121 |
| Bond length RMS Z-score | 0.292 | 0.736 |
| Bond angle RMS Z-score | 0.548 | 1.050 |
| Model quality | ||
| Ramachandran plot normality | 1.487 97 | 1.200 95 |
| Rotamer normality | -1.677 64 | -2.099 56 |
| Coarse packing | 0.368 78 | 0.362 78 |
| Fine packing | 0.810 94 | 1.008 95 |
| Bump severity | 0.022 37 | 0.016 45 |
| Hydrogen bond satisfaction | 0.929 86 | 0.931 88 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 29 |
| Side chains flipped | 4 |
| Waters removed | 164 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 183 |
| Residues fitting density worse | 0 |