This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
| Hendra virus W protein C-terminus in complex with Importin alpha 3 crystal form 2 |
| This entry was created with PDB-REDO version 8.08 using the deposited PDB model version 1.5 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 48.070Å b: 60.040Å c: 89.870Å | α: 90.00° β: 97.85° γ: 90.00° | ||
| Resolution | 2.20 Å | Reflections | 25804 | Test set | 1227 (4.8%) |
| R | 0.1865 | R-free | 0.2155 | ||
| According to PDB-REDO | |||||
| Resolution | 2.20 Å | Reflections | 25804 | Test set | 1227 (4.8%) |
| Twin | false | Radiation damage | 93 | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1853 | 0.1583 |
| R-free | 0.2173 | 0.2047 |
| Bond length RMS Z-score | 0.462 | 0.646 |
| Bond angle RMS Z-score | 0.701 | 0.762 |
| Model quality | ||
| Ramachandran plot normality | -0.565 68 | -2.562 22 |
| Rotamer normality | -1.030 71 | -1.537 60 |
| Coarse packing | 2.151 98 | 1.995 97 |
| Fine packing | -0.328 76 | -0.921 56 |
| Bump severity | 0.004 76 | 0.007 65 |
| Hydrogen bond satisfaction | 0.923 80 | 0.948 96 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 8 |
| Side chains built | 0 |
| Waters removed | 19 |
| Peptides flipped | 2 |
| Chiralities fixed | 0 |
| Residues fitting density better | 5 |
| Residues fitting density worse | 0 |