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| Nipah virus W protein C-terminus in complex with Importin alpha 1 |
| This entry was created with PDB-REDO version 8.08 using the deposited PDB model version 1.5 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 77.855Å b: 88.818Å c: 97.646Å | α: 90.00° β: 90.00° γ: 90.00° | ||
| Resolution | 2.10 Å | Reflections | 38217 | Test set | 1864 (4.9%) |
| R | 0.1855 | R-free | 0.2033 | ||
| According to PDB-REDO | |||||
| Resolution | 2.10 Å | Reflections | 38217 | Test set | 1864 (4.9%) |
| Twin | false | Radiation damage | 78 | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1858 | 0.1754 |
| R-free | 0.2092 | 0.2103 |
| Bond length RMS Z-score | 0.522 | 0.611 |
| Bond angle RMS Z-score | 0.744 | 0.762 |
| Model quality | ||
| Ramachandran plot normality | -0.890 58 | -1.892 33 |
| Rotamer normality | -1.481 62 | -1.812 55 |
| Coarse packing | 2.611 99 | 2.287 98 |
| Fine packing | 0.187 86 | 0.031 83 |
| Bump severity | 0.004 76 | 0.004 76 |
| Hydrogen bond satisfaction | 0.943 95 | 0.936 91 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 6 |
| Side chains built | 0 |
| Waters removed | 36 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 5 |
| Residues fitting density worse | 0 |