This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
| Importin alpha 3 in cargo free state |
| This entry was created with PDB-REDO version 8.08 using the deposited PDB model version 1.5 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 47.118Å b: 53.229Å c: 91.309Å | α: 90.00° β: 92.86° γ: 90.00° | ||
| Resolution | 2.30 Å | Reflections | 19148 | Test set | 937 (4.9%) |
| R | 0.2501 | R-free | 0.2685 | ||
| According to PDB-REDO | |||||
| Resolution | 2.30 Å | Reflections | 19148 | Test set | 937 (4.9%) |
| Twin | false | Radiation damage | 68 | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2678 | 0.2422 |
| R-free | 0.2800 | 0.2797 |
| Bond length RMS Z-score | 0.513 | 0.439 |
| Bond angle RMS Z-score | 0.849 | 0.597 |
| Model quality | ||
| Ramachandran plot normality | 0.072 84 | -2.985 17 |
| Rotamer normality | -1.400 63 | -2.350 44 |
| Coarse packing | 2.612 99 | 2.374 98 |
| Fine packing | 0.030 83 | -0.323 76 |
| Bump severity | 0.016 43 | 0.010 56 |
| Hydrogen bond satisfaction | 0.938 92 | 0.927 84 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 6 |
| Side chains built | 0 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 1 |
| Residues fitting density worse | 0 |