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| Nipah virus W protein C-terminus in complex with Importin alpha 3 |
| This entry was created with PDB-REDO version 8.08 using the deposited PDB model version 1.5 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 1 21 1 | a: 47.701Å b: 65.610Å c: 73.939Å | α: 90.00° β: 99.79° γ: 90.00° | ||
| Resolution | 2.30 Å | Reflections | 19788 | Test set | 989 (5.0%) |
| R | 0.1994 | R-free | 0.2224 | ||
| According to PDB-REDO | |||||
| Resolution | 2.30 Å | Reflections | 19788 | Test set | 989 (5.0%) |
| Twin | false | Radiation damage | 89 | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1960 | 0.1840 |
| R-free | 0.2160 | 0.2045 |
| Bond length RMS Z-score | 0.549 | 0.220 |
| Bond angle RMS Z-score | 0.756 | 0.426 |
| Model quality | ||
| Ramachandran plot normality | -1.102 53 | -1.025 55 |
| Rotamer normality | -1.630 59 | -0.892 74 |
| Coarse packing | 2.245 98 | 2.048 97 |
| Fine packing | -0.236 78 | -0.412 73 |
| Bump severity | 0.009 59 | 0.005 72 |
| Hydrogen bond satisfaction | 0.944 95 | 0.933 89 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 7 |
| Side chains built | 0 |
| Waters removed | 12 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 2 |
| Residues fitting density worse | 0 |