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| Importin alpha 1 in cargo free state |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.3 |
| From original header | |||||
|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 78.516Å b: 90.007Å c: 100.686Å | α: 90.00° β: 90.00° γ: 90.00° | ||
| Resolution | 2.50 Å | Reflections | 24772 | Test set | 1262 (5.1%) |
| R | 0.1919 | R-free | 0.2130 | ||
| According to PDB-REDO | |||||
| Resolution | 2.50 Å | Reflections | 24772 | Test set | 1262 (5.1%) |
| Twin | false | Radiation damage | N/A | ||
| PDB-REDO files | |||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||
| Links | |||||
| PDBe | RCSB PDB | Proteopedia | |||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2002 | 0.1839 |
| R-free | 0.2209 | 0.2125 |
| Bond length RMS Z-score | 0.469 | 0.207 |
| Bond angle RMS Z-score | 0.699 | 0.417 |
| Model quality | ||
| Ramachandran plot normality | -0.883 56 | -1.156 49 |
| Rotamer normality | -1.145 75 | -0.496 86 |
| Coarse packing | 2.743 100 | 2.405 99 |
| Fine packing | 0.678 92 | 0.351 88 |
| Bump severity | 0.008 64 | 0.010 58 |
| Hydrogen bond satisfaction | 0.938 92 | 0.933 89 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 8 |
| Side chains built | 0 |
| Waters removed | 5 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 0 |