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Crystal structure of GH family 81 beta-1,3-glucanase from Rhizomucr miehei complexed with laminarihexaose |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 108.700 Å | b: 99.020 Å | c: 138.430 Å | α: 90.00° | β: 111.35° | γ: 90.00° |
Resolution | 2.70 Å | Reflections | 74950 | Test set | 2005 (2.7%) | ||
R | 0.1760 | R-free | 0.2320 | ||||
According to PDB-REDO | |||||||
Resolution | 2.70 Å | Reflections | 74950 | Test set | 2005 (2.7%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2008 | 0.2246 |
R-free | 0.2436 | 0.2489 |
Bond length RMS Z-score | 0.435 | 0.420 |
Bond angle RMS Z-score | 0.676 | 0.671 |
Model quality | ||
Ramachandran plot normality | -2.782 18 | -2.890 17 |
Rotamer normality | -3.018 39 | -3.387 34 |
Coarse packing | -1.085 14 | -0.878 20 |
Fine packing | -1.800 20 | -1.442 34 |
Bump severity | 0.026 33 | 0.035 26 |
Hydrogen bond satisfaction | 0.875 25 | 0.867 20 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 37 |
Side chains flipped | 69 |
Waters removed | 295 |
Peptides flipped | 7 |
Chiralities fixed | 0 |
Residues fitting density better | 4 |
Residues fitting density worse | 18 |