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Crystal Structure of MERS-CoV neutralizing antibody G4 Fab |
This entry was created with PDB-REDO version 7.29. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 80.678 Å | b: 88.759 Å | c: 128.469 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.57 Å | Reflections | 128682 | Test set | 6419 (5.0%) | ||
R | 0.1820 | R-free | 0.2150 | ||||
According to PDB-REDO | |||||||
Resolution | 1.57 Å | Reflections | 128682 | Test set | 6419 (5.0%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1844 | 0.1848 |
R-free | 0.2171 | 0.2118 |
Bond length RMS Z-score | 0.274 | 0.480 |
Bond angle RMS Z-score | 0.589 | 0.713 |
Model quality | ||
Ramachandran plot normality | 1.038 94 | 1.155 95 |
Rotamer normality | -0.453 86 | 0.011 92 |
Coarse packing | 0.377 79 | 0.315 76 |
Fine packing | 1.196 96 | 1.275 96 |
Bump severity | 0.002 87 | 0.002 87 |
Hydrogen bond satisfaction | 0.910 64 | 0.913 68 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 6 |
Side chains flipped | 0 |
Waters removed | 124 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 5 |
Residues fitting density worse | 1 |