| Crystal Structure of MERS-CoV neutralizing antibody G4 Fab |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 2.2 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 80.678 Å | b: 88.759 Å | c: 128.469 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 1.57 Å | Reflections | 128682 | Test set | 6419 (5.0%) | ||
| R | 0.1823 | R-free | 0.2151 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.57 Å | Reflections | 128682 | Test set | 6419 (5.0%) | ||
| Twin | false | Radiation damage |
96
Data shows severe radiation damage
|
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| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1850 | 0.2005 |
| R-free | 0.2176 | 0.2294 |
| Bond length RMS Z-score | 0.596 | 0.510 |
| Bond angle RMS Z-score | 0.718 | 0.675 |
| Model quality | ||
| Ramachandran plot normality | 0.868 94 | 0.699 92 |
| Rotamer normality | 0.618 95 | 1.238 98 |
| Coarse packing | 0.627 75 | 0.551 72 |
| Fine packing | 1.969 98 | 1.983 98 |
| Bump severity | 0.002 85 | 0.002 85 |
| Hydrogen bond satisfaction | 0.901 51 | 0.904 55 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 6 |
| Side chains flipped | 0 |
| Waters removed | 142 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 26 |