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| Crystal Structure of MERS-CoV neutralizing antibody G4 Fab |
| This entry was created with PDB-REDO version 7.29. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 80.678 Å | b: 88.759 Å | c: 128.469 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 1.57 Å | Reflections | 128682 | Test set | 6419 (5.0%) | ||
| R | 0.1820 | R-free | 0.2150 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.57 Å | Reflections | 128682 | Test set | 6419 (5.0%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1844 | 0.1848 |
| R-free | 0.2171 | 0.2118 |
| Bond length RMS Z-score | 0.274 | 0.480 |
| Bond angle RMS Z-score | 0.589 | 0.713 |
| Model quality | ||
| Ramachandran plot normality | 1.038 94 | 1.155 95 |
| Rotamer normality | -0.453 86 | 0.011 92 |
| Coarse packing | 0.377 79 | 0.315 76 |
| Fine packing | 1.196 96 | 1.275 96 |
| Bump severity | 0.002 87 | 0.002 87 |
| Hydrogen bond satisfaction | 0.910 64 | 0.913 68 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 6 |
| Side chains flipped | 0 |
| Waters removed | 124 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 5 |
| Residues fitting density worse | 1 |