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LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH TN-PEPTIDE |
This entry was created with PDB-REDO version 7.36. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 44.865 Å | b: 88.502 Å | c: 110.783 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.17 Å | Reflections | 143755 | Test set | 4270 (3.0%) | ||
R | 0.1070 | R-free | 0.1300 | ||||
According to PDB-REDO | |||||||
Resolution | 1.17 Å | Reflections | 143755 | Test set | 4270 (3.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1083 | 0.1175 |
R-free | 0.1309 | 0.1356 |
Bond length RMS Z-score | 0.832 | 0.669 |
Bond angle RMS Z-score | 0.947 | 0.880 |
Model quality | ||
Ramachandran plot normality | -0.297 73 | -0.209 75 |
Rotamer normality | 0.600 97 | 0.786 97 |
Coarse packing | 0.021 63 | 0.052 65 |
Fine packing | -1.711 23 | -1.616 27 |
Bump severity | 0.007 67 | 0.001 92 |
Hydrogen bond satisfaction | 0.877 26 | 0.885 33 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 5 |
Side chains flipped | 0 |
Waters removed | 69 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 32 |