Crystal structure of ScGas2 in complex with compound 9 |
This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 2.2 |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 50.200 Å | b: 71.200 Å | c: 150.440 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 1.70 Å | Reflections | 59931 | Test set | 1832 (3.1%) | ||
R | 0.1954 | R-free | 0.2119 | ||||
According to PDB-REDO | |||||||
Resolution | 1.70 Å | Reflections | 59931 | Test set |
1831 (3.1%)
|
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Twin | false | Radiation damage | 61 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1975 | 0.1666 |
R-free |
0.2278
|
0.1921 |
Bond length RMS Z-score | 0.810 | 0.258 |
Bond angle RMS Z-score | 0.794 | 0.533 |
Model quality | ||
Ramachandran plot normality | -0.793 61 | -0.585 67 |
Rotamer normality | -0.524 81 | -0.210 87 |
Coarse packing | 0.312 63 | 0.404 67 |
Fine packing | -0.913 57 | -0.926 56 |
Bump severity | 0.000 95 | 0.001 90 |
Hydrogen bond satisfaction | 0.879 28 | 0.874 24 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 4 |
Side chains built | 0 |
Waters removed | 10 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 68 |
Residues fitting density worse | 0 |