SrpA with sialyl LewisX |
This entry was created with PDB-REDO version 8.07. |
From original header | |||||||
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Spacegroup | C 1 2 1 | a: 173.911 Å | b: 46.766 Å | c: 46.766 Å | α: 90.00° | β: 102.74° | γ: 90.00° |
Resolution | 1.64 Å | Reflections | 60997 | Test set | 2166 (3.6%) | ||
R | 0.1931 | R-free | 0.2176 | ||||
According to PDB-REDO | |||||||
Resolution | 1.64 Å | Reflections | 60997 | Test set | 2166 (3.6%) | ||
Twin | false | Radiation damage | 75 | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
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Crystallographic refinement | ||
R | 0.1965 | 0.1892 |
R-free | 0.2249 | 0.2164 |
Bond length RMS Z-score | 0.878 | 0.512 |
Bond angle RMS Z-score | 0.822 | 0.685 |
Model quality | ||
Ramachandran plot normality | 0.285 87 | 0.932 94 |
Rotamer normality | -0.617 80 | -0.239 86 |
Coarse packing | 0.281 62 | 0.309 63 |
Fine packing | -1.630 26 | -1.344 38 |
Bump severity | 0.064 14 | 0.075 12 |
Hydrogen bond satisfaction | 0.870 22 | 0.914 69 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 4 |
Side chains flipped | 0 |
Waters removed | 111 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 8 |
Residues fitting density worse | 0 |