This entry is not up to date with the most recent version of PDB-REDO.
Please log in
to request an update.
| Crystal Structure of Human Complement C3b in complex with DAF (CCP2-4) |
| This entry was created with PDB-REDO version 7.00. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 2 21 | a: 117.429 Å | b: 142.378 Å | c: 323.697 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 4.19 Å | Reflections | 38984 | Test set | 1955 (5.0%) | ||
| R | 0.2695 | R-free | 0.3073 | ||||
| According to PDB-REDO | |||||||
| Resolution | 4.19 Å | Reflections | 38984 | Test set | 1955 (5.0%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2932 | 0.2688 |
| R-free | 0.3292 | 0.3021 |
| Bond length RMS Z-score | 0.622 | 0.483 |
| Bond angle RMS Z-score | 0.967 | 0.737 |
| Model quality | ||
| Ramachandran plot normality | -3.468 8 | -2.393 17 |
| Rotamer normality | -6.221 1 | -6.147 1 |
| Coarse packing | -1.512 N/A | -1.564 N/A |
| Fine packing | -3.160 1 | -2.887 2 |
| Bump severity | 0.211 4 | 0.033 41 |
| Hydrogen bond satisfaction | 0.778 4 | 0.803 7 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 10 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 470 |
| Residues fitting density worse | 35 |