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Crystal Structure of Human Complement C3b in complex with DAF (CCP2-4) |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 21 2 21 | a: 117.429 Å | b: 142.377 Å | c: 323.697 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 4.19 Å | Reflections | 38982 | Test set | 1955 (5.0%) | ||
R | 0.2695 | R-free | 0.3073 | ||||
According to PDB-REDO | |||||||
Resolution | 4.19 Å | Reflections | 38982 | Test set | 1955 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2934 | 0.2643 |
R-free | 0.3298 | 0.3101 |
Bond length RMS Z-score | 1.418 | 0.314 |
Bond angle RMS Z-score | 1.453 | 0.638 |
Model quality | ||
Ramachandran plot normality | -4.043 9 | -3.667 11 |
Rotamer normality | -4.999 10 | -4.717 12 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 0 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 125 |
Residues fitting density worse | 0 |