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| Crystal Structure of Human Complement C3b in Complex with CR1 (CCP15- 17) |
| This entry was created with PDB-REDO version 7.32. |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 1 | a: 104.320 Å | b: 113.710 Å | c: 138.520 Å | α: 82.74° | β: 71.77° | γ: 80.95° |
| Resolution | 3.30 Å | Reflections | 88055 | Test set | 4424 (5.0%) | ||
| R | 0.2510 | R-free | 0.2910 | ||||
| According to PDB-REDO | |||||||
| Resolution | 3.30 Å | Reflections | 88055 | Test set | 4424 (5.0%) | Twin | false |
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2600 | 0.2472 |
| R-free | 0.2963 | 0.2961 |
| Bond length RMS Z-score | 0.190 | 0.358 |
| Bond angle RMS Z-score | 0.453 | 0.623 |
| Model quality | ||
| Ramachandran plot normality | -1.532 39 | -2.951 17 |
| Rotamer normality | -2.281 53 | -3.542 32 |
| Coarse packing | -1.466 7 | -1.307 9 |
| Fine packing | -2.647 4 | -2.271 9 |
| Bump severity | 0.093 11 | 0.036 25 |
| Hydrogen bond satisfaction | 0.796 5 | 0.817 7 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 9 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 72 |
| Residues fitting density worse | 4 |