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| Crystal Structure of Human Complement C3b in Complex with CR1 (CCP15- 17) |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.3 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 1 | a: 104.320 Å | b: 113.710 Å | c: 138.520 Å | α: 82.74° | β: 71.77° | γ: 80.95° |
| Resolution | 3.30 Å | Reflections | 88042 | Test set | 4423 (5.0%) | ||
| R | 0.2505 | R-free | 0.2913 | ||||
| According to PDB-REDO | |||||||
| Resolution | 3.30 Å | Reflections | 88042 | Test set | 4423 (5.0%) | ||
| Twin | false | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2598 | 0.2538 |
| R-free | 0.2958 | 0.2918 |
| Bond length RMS Z-score | 0.630 | 0.339 |
| Bond angle RMS Z-score | 0.917 | 0.636 |
| Model quality | ||
| Ramachandran plot normality | -1.420 44 | -3.022 17 |
| Rotamer normality | -2.259 46 | -3.721 22 |
| Coarse packing | N/A N/A | N/A N/A |
| Fine packing | N/A N/A | N/A N/A |
| Bump severity | 0.000 95 | 0.000 95 |
| Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 0 |
| Side chains flipped | 0 |
| Waters removed | 0 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 95 |
| Residues fitting density worse | 1 |