| Complex structure of MERS-RBD bound with 4C2 antibody |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 1.5 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 74.083 Å | b: 110.401 Å | c: 172.981 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.41 Å | Reflections | 54953 | Test set | 2784 (5.1%) | ||
| R | 0.2446 | R-free | 0.2891 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.41 Å | Reflections | 54953 | Test set | 2784 (5.1%) | ||
| Twin | false | Radiation damage | 43 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
|||||
| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2605 | 0.2534 |
| R-free | 0.2955 | 0.2896 |
| Bond length RMS Z-score | 0.481 | 0.323 |
| Bond angle RMS Z-score | 0.655 | 0.569 |
| Model quality | ||
| Ramachandran plot normality | -1.216 49 | -1.369 45 |
| Rotamer normality | -2.332 44 | -2.353 44 |
| Coarse packing | 0.114 54 | 0.146 56 |
| Fine packing | -0.037 82 | 0.054 84 |
| Bump severity | 0.061 15 | 0.087 11 |
| Hydrogen bond satisfaction | 0.859 17 | 0.854 15 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 15 |
| Side chains flipped | 4 |
| Waters removed | 19 |
| Peptides flipped | 17 |
| Chiralities fixed | 0 |
| Residues fitting density better | 12 |
| Residues fitting density worse | 2 |