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Receptor binding domain and Fab complex |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 81.492 Å | b: 64.461 Å | c: 186.049 Å | α: 90.00° | β: 100.43° | γ: 90.00° |
Resolution | 3.17 Å | Reflections | 31133 | Test set | 1566 (5.0%) | ||
R | 0.2033 | R-free | 0.2450 | ||||
According to PDB-REDO | |||||||
Resolution | 3.17 Å | Reflections | 31133 | Test set | 1566 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2199 | 0.1847 |
R-free | 0.2603 | 0.2208 |
Bond length RMS Z-score | 0.847 | 0.365 |
Bond angle RMS Z-score | 1.073 | 0.606 |
Model quality | ||
Ramachandran plot normality | -2.761 19 | -2.356 24 |
Rotamer normality | -4.591 19 | -3.722 29 |
Coarse packing | -0.428 40 | -0.105 56 |
Fine packing | -0.957 55 | -0.474 71 |
Bump severity | 0.164 7 | 0.171 6 |
Hydrogen bond satisfaction | 0.838 10 | 0.869 21 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 14 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 13 |
Chiralities fixed | 0 |
Residues fitting density better | 17 |
Residues fitting density worse | 0 |