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Complement factor H in complex with the GM1 glycan |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 1 | a: 75.770 Å | b: 82.860 Å | c: 86.570 Å | α: 112.97° | β: 111.43° | γ: 99.63° |
Resolution | 2.24 Å | Reflections | 79286 | Test set | 3965 (5.0%) | ||
R | 0.1810 | R-free | 0.2280 | ||||
According to PDB-REDO | |||||||
Resolution | 2.24 Å | Reflections | 79286 | Test set | 3965 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1857 | 0.1828 |
R-free | 0.2302 | 0.2175 |
Bond length RMS Z-score | 0.538 | 0.522 |
Bond angle RMS Z-score | 0.672 | 0.714 |
Model quality | ||
Ramachandran plot normality | -1.344 44 | -0.725 61 |
Rotamer normality | -1.828 61 | -1.779 62 |
Coarse packing | -1.196 11 | -1.054 14 |
Fine packing | -1.353 38 | -0.930 56 |
Bump severity | 0.015 47 | 0.015 47 |
Hydrogen bond satisfaction | 0.890 38 | 0.888 36 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 16 |
Side chains flipped | 31 |
Waters removed | 149 |
Peptides flipped | 5 |
Chiralities fixed | 0 |
Residues fitting density better | 15 |
Residues fitting density worse | 3 |