| Crystal structure of potent neutralizing antibody m336 in complex with MERS Co-V RBD |
| This entry was created with PDB-REDO version 8.13 using the deposited PDB model version 1.5 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 21 21 21 | a: 47.795 Å | b: 146.879 Å | c: 200.508 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
| Resolution | 2.45 Å | Reflections | 48629 | Test set | 2463 (5.1%) | ||
| R | 0.1982 | R-free | 0.2491 | ||||
| According to PDB-REDO | |||||||
| Resolution | 2.45 Å | Reflections | 48629 | Test set | 2463 (5.1%) | ||
| Twin | false | Radiation damage | 76 | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.2192 | 0.1957 |
| R-free | 0.2668 | 0.2420 |
| Bond length RMS Z-score | 0.416 | 0.264 |
| Bond angle RMS Z-score | 0.618 | 0.502 |
| Model quality | ||
| Ramachandran plot normality | -1.609 39 | -0.622 66 |
| Rotamer normality | -0.011 89 | -0.874 75 |
| Coarse packing | -0.174 41 | 0.081 53 |
| Fine packing | -0.513 71 | -0.211 79 |
| Bump severity | 0.176 6 | 0.165 6 |
| Hydrogen bond satisfaction | 0.854 15 | 0.880 29 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 18 |
| Side chains flipped | 0 |
| Waters removed | 15 |
| Peptides flipped | 3 |
| Chiralities fixed | 0 |
| Residues fitting density better | 30 |
| Residues fitting density worse | 0 |