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Crystal structure of potent neutralizing antibody m336 in complex with MERS Co-V RBD |
This entry was created with PDB-REDO version 7.32. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 47.795 Å | b: 146.879 Å | c: 200.508 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.45 Å | Reflections | 48826 | Test set | 2480 (5.1%) | ||
R | 0.1980 | R-free | 0.2490 | ||||
According to PDB-REDO | |||||||
Resolution | 2.45 Å | Reflections | 48826 | Test set | 2480 (5.1%) | Twin | false |
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2187 | 0.1995 |
R-free | 0.2674 | 0.2377 |
Bond length RMS Z-score | 0.164 | 0.369 |
Bond angle RMS Z-score | 0.337 | 0.629 |
Model quality | ||
Ramachandran plot normality | -1.762 34 | -0.746 60 |
Rotamer normality | -0.009 92 | -1.834 61 |
Coarse packing | -0.486 37 | -0.205 51 |
Fine packing | -0.701 64 | -0.260 77 |
Bump severity | 0.177 6 | 0.159 7 |
Hydrogen bond satisfaction | 0.855 15 | 0.885 33 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 19 |
Side chains flipped | 4 |
Waters removed | 21 |
Peptides flipped | 3 |
Chiralities fixed | 0 |
Residues fitting density better | 17 |
Residues fitting density worse | 0 |