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The crystal structure of hemagglutinin form A/chicken/New York/14677-13/1998 in complex with LSTa |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | C 1 2 1 | a: 254.967 Å | b: 134.779 Å | c: 122.622 Å | α: 90.00° | β: 112.20° | γ: 90.00° |
Resolution | 2.80 Å | Reflections | 92840 | Test set | 4650 (5.0%) | ||
R | 0.2196 | R-free | 0.2540 | ||||
According to PDB-REDO | |||||||
Resolution | 2.80 Å | Reflections | 92840 | Test set | 4650 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2194 | 0.2197 |
R-free | 0.2527 | 0.2500 |
Bond length RMS Z-score | 1.011 | 0.453 |
Bond angle RMS Z-score | 0.894 | 0.629 |
Model quality | ||
Ramachandran plot normality | -2.428 24 | -2.254 27 |
Rotamer normality | -2.843 35 | -1.807 55 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 67 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 35 |
Chiralities fixed | 0 |
Residues fitting density better | 6 |
Residues fitting density worse | 3 |