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Structure of the MERS-CoV fusion core |
This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.3 |
From original header | |||||||
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Spacegroup | P 3 | a: 42.816 Å | b: 42.816 Å | c: 75.566 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
Resolution | 1.90 Å | Reflections | 12172 | Test set | 583 (4.8%) | ||
R | 0.1847 | R-free | 0.2135 | ||||
According to PDB-REDO | |||||||
Resolution | 1.90 Å | Reflections | 12172 | Test set | 583 (4.8%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1841 | 0.1770 |
R-free | 0.2188 | 0.2165 |
Bond length RMS Z-score | 0.718 | 0.470 |
Bond angle RMS Z-score | 0.593 | 0.572 |
Model quality | ||
Ramachandran plot normality | 1.486 97 | 1.277 96 |
Rotamer normality | -0.434 87 | 0.985 98 |
Coarse packing | 2.394 99 | 2.426 99 |
Fine packing | 2.891 99 | 3.083 99 |
Bump severity | 0.022 37 | 0.011 56 |
Hydrogen bond satisfaction | 0.937 92 | 0.937 92 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 4 |
Side chains flipped | 0 |
Waters removed | 12 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |