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| Structure of the MERS-CoV fusion core |
| This entry was created with PDB-REDO version 8.04 using the deposited PDB model version 1.3 |
| From original header | |||||||
|---|---|---|---|---|---|---|---|
| Spacegroup | P 3 | a: 42.816 Å | b: 42.816 Å | c: 75.566 Å | α: 90.00° | β: 90.00° | γ: 120.00° |
| Resolution | 1.90 Å | Reflections | 12172 | Test set | 583 (4.8%) | ||
| R | 0.1847 | R-free | 0.2135 | ||||
| According to PDB-REDO | |||||||
| Resolution | 1.90 Å | Reflections | 12172 | Test set | 583 (4.8%) | ||
| Twin | false | Radiation damage | N/A | ||||
| PDB-REDO files | |||||||
| Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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| Links | |||||||
| PDBe | RCSB PDB | 3D bionotes | Proteopedia | ||||
| Original | PDB-REDO | |
|---|---|---|
| Crystallographic refinement | ||
| R | 0.1841 | 0.1770 |
| R-free | 0.2188 | 0.2165 |
| Bond length RMS Z-score | 0.718 | 0.470 |
| Bond angle RMS Z-score | 0.593 | 0.572 |
| Model quality | ||
| Ramachandran plot normality | 1.486 97 | 1.277 96 |
| Rotamer normality | -0.434 87 | 0.985 98 |
| Coarse packing | 2.394 99 | 2.426 99 |
| Fine packing | 2.891 99 | 3.083 99 |
| Bump severity | 0.022 37 | 0.011 56 |
| Hydrogen bond satisfaction | 0.937 92 | 0.937 92 |
| WHAT_CHECK | Report | Report |
Kleywegt-like plot |
| Description | Count |
|---|---|
| Rotamers changed | 4 |
| Side chains flipped | 0 |
| Waters removed | 12 |
| Peptides flipped | 0 |
| Chiralities fixed | 0 |
| Residues fitting density better | 0 |
| Residues fitting density worse | 0 |