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BEL beta-trefoil complex with T-Antigen |
This entry was created with PDB-REDO version 8.03. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 66.390 Å | b: 70.110 Å | c: 71.520 Å | α: 90.00° | β: 106.67° | γ: 90.00° |
Resolution | 1.90 Å | Reflections | 48070 | Test set | 2421 (5.0%) | ||
R | 0.1907 | R-free | 0.2254 | ||||
According to PDB-REDO | |||||||
Resolution | 1.90 Å | Reflections | 48070 | Test set | 2421 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1874 | 0.1814 |
R-free | 0.2180 | 0.2082 |
Bond length RMS Z-score | 1.111 | 0.592 |
Bond angle RMS Z-score | 0.690 | 0.649 |
Model quality | ||
Ramachandran plot normality | -2.277 25 | -2.101 28 |
Rotamer normality | 0.093 93 | 0.636 97 |
Coarse packing | 0.471 82 | 0.476 82 |
Fine packing | -1.425 35 | -1.212 44 |
Bump severity | 0.011 56 | 0.018 42 |
Hydrogen bond satisfaction | 0.909 63 | 0.915 71 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 21 |
Side chains flipped | 0 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |