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Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen |
This entry was created with PDB-REDO version 7.31. |
From original header | |||||||
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Spacegroup | P 1 21 1 | a: 43.750 Å | b: 35.540 Å | c: 44.060 Å | α: 90.00° | β: 94.85° | γ: 90.00° |
Resolution | 1.56 Å | Reflections | 18212 | Test set | 939 (5.2%) | ||
R | 0.1560 | R-free | 0.1870 | ||||
According to PDB-REDO | |||||||
Resolution | 1.56 Å | Reflections | 18212 | Test set | 939 (5.2%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.1481 | 0.1491 |
R-free | 0.1764 | 0.1764 |
Bond length RMS Z-score | 0.321 | 0.560 |
Bond angle RMS Z-score | 0.491 | 0.725 |
Model quality | ||
Ramachandran plot normality | -1.849 32 | -1.841 33 |
Rotamer normality | -0.285 89 | -0.567 85 |
Coarse packing | 0.293 75 | 0.282 75 |
Fine packing | -1.629 26 | -1.681 24 |
Bump severity | 0.000 96 | 0.000 96 |
Hydrogen bond satisfaction | 0.918 75 | 0.920 77 |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 5 |
Side chains flipped | 0 |
Waters removed | 23 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 0 |