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Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with b-methylfucoside |
This entry was created with PDB-REDO version 8.04. |
From original header | |||||||
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Spacegroup | P 21 21 21 | a: 71.211 Å | b: 90.335 Å | c: 189.168 Å | α: 90.00° | β: 90.00° | γ: 90.00° |
Resolution | 2.23 Å | Reflections | 59858 | Test set | 2993 (5.0%) | ||
R | 0.2426 | R-free | 0.3134 | ||||
According to PDB-REDO | |||||||
Resolution | 2.23 Å | Reflections | 59858 | Test set | 2993 (5.0%) | ||
Twin | false | Radiation damage | N/A | ||||
PDB-REDO files | |||||||
Re-refined and rebuilt structure | Re-refined (only) structure |
All files
(compressed) |
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Links | |||||||
PDBe | RCSB PDB | 3D bionotes | Proteopedia |
Original | PDB-REDO | |
---|---|---|
Crystallographic refinement | ||
R | 0.2259 | 0.2639 |
R-free | 0.2990 | 0.2769 |
Bond length RMS Z-score | 29.487 | 21.158 |
Bond angle RMS Z-score | 1.028 | 1.315 |
Model quality | ||
Ramachandran plot normality | -2.151 28 | -1.606 39 |
Rotamer normality | -3.861 20 | -1.330 65 |
Coarse packing | N/A N/A | N/A N/A |
Fine packing | N/A N/A | N/A N/A |
Bump severity | 0.000 95 | 0.000 95 |
Hydrogen bond satisfaction | N/A N/A | N/A N/A |
WHAT_CHECK | Report | Report |
Kleywegt-like plot |
Description | Count |
---|---|
Rotamers changed | 41 |
Side chains flipped | 4 |
Waters removed | 0 |
Peptides flipped | 0 |
Chiralities fixed | 0 |
Residues fitting density better | 0 |
Residues fitting density worse | 33 |